It's great to hear you got it working!
I was kinda busy doing a mod to my HDR, but now that that's done, I figured I'd have another go at my MDR, that didn't boot up anymore, last time I tried. As it turned out, the BIOS had the drive detected as "LBA" but in my case, switching it to "Large" instead allowed me to boot it back up.
I made an image of the drive via an old version of Norton Ghost - so, as of a moment ago, I DO have a working installation of the MDR operating system. So, if you have a harddrive that was formatted via an HDR/MDR or D8B, then you could simply copy those files onto your harddrive, and it should boot your MDR.
Let me know if you still need those files, or if you were finally able to install from the floppies (sounds like you did... or at least the original installation of the harddrive came back after cleaning up... either way, sounds like you're up and running).
I'll likely report my findings in a new post, but my intention is to try to convert my MDR to an HDR... looks like there's really no way to just "flash" the BIOS (spent a few hours trying, just now), so I'll have to order a "large harddrive HDR BIOS chip" and wait for it to get here, before I can close the MDR back up.
Anyway... I'll be having an MDR on the bench and opened up over the weekend (probably even longer)... so, if you run into any other issues while I have it open, I could just take a look and compare with mine

(I have an HDR, but I also have an MDR. The idea at the time was, that I'd leave the MDR in the rehearsal room to record my band, and then load that drive into the HDR at home and be able to do rough-mixes straight from the HDR/D8B combo. I haven't been in a band the last few years, though... so the MDR only collected dust, lately, and I didn't do the same mods as I did with my HDR. But now that I'll open it up, I'll try to make all the same mods as on my HDR (CF card for OS accessible from the back, quieter fans, SATA/SSD drive caddy where the floppy drive used to be in ADDITION to the IDE drive caddy the HDR/MDR comes with... with both working... so, quite the job).